PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN539271.1_FGP007
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GRAS
Protein Properties Length: 201aa    MW: 22399.8 Da    PI: 5.5928
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN539271.1_FGP007genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS851.3e-26187106197
               GRAS 106 vegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvk 197
                        +e+e+ vH+iD++    +QW+ Ll+ La+Rpegpp+lR+T v++    +ke l +t+  L+k Ae+l+vpf+fn+ v++rl++l++e+Lr k
  KN539271.1_FGP007   1 MESEKIVHVIDLGGADATQWLELLHLLAARPEGPPHLRLTSVHE----HKELLTQTAMALTKEAERLDVPFQFNP-VVSRLDALDVESLRPK 87 
                        68899***************************************....9**************************.7************755 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF035144.5E-24187IPR005202Transcription factor GRAS
PROSITE profilePS5098514.9741201IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 201 aa     Download sequence    Send to blast
MESEKIVHVI DLGGADATQW LELLHLLAAR PEGPPHLRLT SVHEHKELLT QTAMALTKEA  60
ERLDVPFQFN PVVSRLDALD VESLRPKAVA VLLAKTGMLG SDAPFLFLTN GKDEWFFPQK  120
FAFGLSFSRT CLLPSGNRIA AACSHCGFYL FFMLFILNQV VKIAYWSLQK EENVEEENKG  180
YKDPGEACNP ASLAGWAFVS F
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2875401e-138AK287540.1 Oryza sativa Japonica Group cDNA, clone: J065011K01, full insert sequence.
GenBankAP0032591e-138AP003259.4 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0466H10.
GenBankAP0149571e-138AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
GenBankCP0126091e-138CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
SwissprotQ9LPR81e-32SCL3_ARATH; Scarecrow-like protein 3
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60438176
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.17e-34scarecrow-like 3